PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G450000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 351aa    MW: 38417.7 Da    PI: 7.1831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G450000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13105156155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r  h  +Er+RR+++N+ +  Lr+l+P+    + k+ + a+i   +v+YIk+Lq
  Aqcoe5G450000.1.p 105 QRILHITVERNRRKQMNEHLGVLRTLMPSF---YVKRGDQASIIGGVVDYIKELQ 156
                        688899***********************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.84E-13102160No hitNo description
SuperFamilySSF474592.88E-17103175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.577104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12106167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSCEGLLGIF DDVEFTGGVS SDDLFSILES LEGAPEFPLF DESVFSTPKG VEDRTTRLVS  60
QKSTSSSTPQ DFENEVEASP ICRKRRRKLF EPTPTSDEVG QDGQQRILHI TVERNRRKQM  120
NEHLGVLRTL MPSFYVKRGD QASIIGGVVD YIKELQQVLQ SLEAKKQRKV YSDVLSPRVV  180
SSPRPIMASA LSPRPLASSL SSPRKPPLSP RVSLPVSPRT PQPTSPYKPR LQYGHLSPTI  240
TTTSHEPSAT ISTTPSFDSV KELAANSKSS IADVEVKFSG ANVLVKTISP RIPGQALKII  300
TALEGHSLEI IHVSISSTDD TMINSFTIKI GIECKLSAEE LAHEIQQTFC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18286RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2538610.0AC253861.1 Aquilegia coerulea clone COL08-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261507.11e-141PREDICTED: transcription factor SPEECHLESS-like
RefseqXP_010261508.11e-141PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C71e-99SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A061G1J31e-140A0A061G1J3_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGVIT_16s0050g02500.t011e-132(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.16e-52bHLH family protein